Journey

Farmer compliance checklist

A comprehensive compliance checklist for UK farmers covering livestock, environmental, animal welfare, health and safety, financial, and scheme obligations. Includes frequency of compliance tasks, enforcement bodies, and consequences of non-compliance.

Agriculture & Farming Regulatory Compliance Updated 15 September 2026
26 milestones references 12 guides

Farm compliance at a glance

Farming is one of the most heavily regulated industries in the UK. This checklist brings together your key compliance obligations across livestock, environment, animal welfare, health and safety, tax, and scheme requirements.

Use this journey to understand what you must do, how often, who enforces it, and what happens if you don't comply. Each section signposts to detailed guides where you can find step-by-step instructions.

Prepare for farm inspections

Understand who inspects farms, what triggers inspections, how to prepare, and your rights during visits.

  1. Livestock compliance

    If you keep cattle, sheep, goats, pigs, or poultry, you have legal obligations for registration, identification, movement reporting, disease testing, and record keeping. These are strictly enforced by the Animal and Plant Health Agency (APHA).

  2. 1 Bovine TB testing

    All cattle keepers must comply with TB testing requirements. Failure results in automatic movement restrictions.

    Comply with bovine TB testing requirements

    Testing frequencies by risk area, pre-movement and post-movement testing, and what happens during a TB breakdown.

  3. 2 Livestock identification and tagging

    All livestock must be correctly identified within legal deadlines before they can be moved.

    Identify and tag livestock

    Species-specific tagging requirements, deadlines, and EID requirements for cattle, sheep, goats, pigs, and deer.

  4. 3 Movement reporting and standstill

    Every livestock movement on or off your holding must be reported within legal deadlines. Standstill periods apply when animals arrive.

    Report livestock movements

    How to report movements for cattle, sheep, goats, and pigs through BCMS, LIS, and eAML2 systems.

  5. 4 Holding registers

    You must maintain accurate records of all animals on your holding, all movements in and out, births, and deaths.

    Keep holding registers

    Species-specific register requirements, what to record, how long to keep records, and annual inventory requirements.

  6. 5 Notifiable disease reporting

    You must report suspected notifiable diseases to APHA immediately. Failure to report is a criminal offence.

    Recognise and report notifiable animal diseases

    How to identify signs of FMD, avian flu, anthrax, and other notifiable diseases and report them to APHA.

  7. Environmental compliance

    Environmental regulations apply to all farms regardless of whether you receive scheme payments. These cover water protection, fertiliser use, pesticide application, and landscape features.

  8. 1 Farming Rules for Water

    Legal requirements to prevent water pollution from farming activities. Apply to all farmers, not just those in Nitrate Vulnerable Zones.

    Comply with farming environmental regulations

    Fertiliser storage and application rules, buffer strips, pesticide regulations, and nutrient management planning.

  9. 2 Nitrate Vulnerable Zones (NVZ)

    If your land is in an NVZ (about 55% of England), stricter rules apply on nitrogen application, closed periods, and record keeping.

  10. 3 Pesticide application

    Anyone applying professional pesticides must hold valid certificates. All sprayers must be tested regularly.

  11. 4 Rules that replaced cross-compliance (scheme participants)

    Cross-compliance ended on 31 December 2023. There is no "conditionality" regime in England: the baseline is domestic law that applies to every farm (Farming Rules for Water, NVZ rules, the Management of Hedgerows (England) Regulations 2024, permits, and animal identification law), plus the terms of any scheme agreement you hold.

  12. Animal welfare compliance

    You have a legal duty of care under the Animal Welfare Act 2006 to ensure the welfare of animals under your control. This means meeting the five welfare needs for all species you keep.

  13. 1 The five welfare needs

    By law, you must provide for animals':

    • Need for a suitable environment - appropriate housing, shelter, space
    • Need for a suitable diet - adequate food and water
    • Need to exhibit normal behaviour - space and facilities for natural behaviours
    • Need to be housed with or apart from other animals - appropriate social groupings
    • Need to be protected from pain, suffering, injury and disease - health management and prompt treatment
    gov.uk

    Welfare codes of practice (opens in a new tab)

    Species-specific welfare codes provide detailed guidance on meeting legal requirements.

  14. 2 Annual Health and Welfare Review

    The funded Annual Health and Welfare Review provides a vet visit to assess your livestock health and welfare. While optional, it demonstrates good practice and can identify issues before they become serious.

    Join the Animal Health and Welfare Pathway

    Eligibility, payment rates by species, and how to book and claim funded annual vet reviews.

  15. Health and safety compliance

    Agriculture has one of the highest rates of workplace fatalities and injuries of any UK industry. You have legal duties under the Health and Safety at Work etc. Act 1974 to protect yourself, employees, and visitors.

    Meet workplace health and safety requirements

    Comprehensive H&S compliance including risk assessment, fire safety, PPE, manual handling, and work at height.

  16. 1 Key farm H&S requirements

    Priority areas for farm health and safety:

    • Risk assessments: Assess risks from all work activities. Record if you have 5+ employees
    • Machinery safety: Guards on PTOs, safe stopping procedures, competent operators
    • Livestock handling: Safe handling facilities, escape routes, training for workers
    • Chemical storage: COSHH assessments, secure storage, PPE for handling
    • Work at height: Safe systems for roof work, tree work, grain storage
    • Lone working: Check-in systems, emergency procedures
    hse.gov.uk

    HSE agriculture guidance (opens in a new tab)

    Health and Safety Executive guidance specifically for farming operations.

  17. 2 If you employ workers

    Employers have additional duties including employer's liability insurance (mandatory), training, supervision, and welfare facilities.

  18. Financial and tax compliance

    Your tax obligations depend on your business structure. All farmers must keep financial records and file tax returns on time.

    Manage your tax compliance

    Self Assessment, VAT, Corporation Tax, record keeping, filing deadlines, and avoiding penalties.

  19. 1 Income and Corporation Tax

    • Sole traders/partnerships: Self Assessment tax return by 31 January (online)
    • Limited companies: Corporation Tax return within 12 months of year end; payment within 9 months
    • Record keeping: Keep records for 5-6 years depending on structure
  20. 2 VAT

    Register for VAT if taxable turnover exceeds the threshold. Farmers can use the Agricultural Flat Rate Scheme if below the threshold.

    VAT registration

    When to register, VAT schemes, and Making Tax Digital requirements.

  21. 3 PAYE (if you employ workers)

    If you pay employees above the threshold, you must operate PAYE, deduct tax and National Insurance, and submit Real Time Information (RTI) to HMRC.

    gov.uk

    Setting up PAYE (opens in a new tab)

    Register as an employer, run payroll, and submit RTI before or on each payday.

  22. 4 Inheritance Tax and succession planning

    Agricultural Property Relief (APR) and Business Property Relief (BPR) can reduce or eliminate Inheritance Tax on farm assets. A reformed regime took effect on 6 April 2026 under the Finance Act 2026.

    Farm Inheritance Tax changes

    Understanding the APR and BPR regime in force from 6 April 2026, and planning under the new rules.

  23. Scheme compliance

    If you're in SFI, Countryside Stewardship, or other agri-environment schemes, you have specific obligations under your agreement.

    Choose the right ELM scheme

    Compare SFI, Countryside Stewardship, and Landscape Recovery to find the right fit for your farm.

  24. 1 SFI agreement obligations

    If you have an SFI agreement, you must deliver the actions you signed up for throughout the 3-year agreement period.

  25. 2 Countryside Stewardship obligations

    CS agreements run for 5-10 years with detailed management prescriptions for each option.

  26. 3 Delinked payments (BPS transition)

    If you received BPS payments, delinked payments continue automatically until 2027 with no action required. However, plan for income replacement as these payments end.

    Understand your delinked payments

    Payment schedule, reduction rates, and planning for income replacement as BPS support ends in 2027.

Compliance calendar summary

Key compliance tasks organised by frequency:

Daily

  • Animal welfare checks for all livestock
  • Update holding register for any births, deaths, movements
  • Monitor for signs of notifiable disease

Within 3 days

  • Report all livestock movements
  • Record pesticide applications

Monthly

  • PAYE payments to HMRC (if employer)
  • Check scheme action compliance dates

Quarterly

  • VAT returns (if registered)
  • Review and update risk assessments

Annually

  • Sheep/goat annual inventory (count on 1 December, record and return by 31 December); pig annual count on a date of your choosing
  • Soil testing (at least every 3-5 years per field)
  • NSTS sprayer testing (every 3 years)
  • Self Assessment/Corporation Tax returns
  • Employer's liability insurance renewal
  • Annual Health and Welfare Review (every 10 months)
  • TB testing (6-monthly to 4-yearly depending on area)

As required

  • Report notifiable diseases immediately
  • Pre-movement TB testing before cattle sales
  • Post-movement TB testing 60-120 days after purchase
  • Tag animals within species deadlines
  • Report pollution incidents to Environment Agency

Getting help with compliance

Support is available to help you meet your compliance obligations: